Instituto de Biotecnologia UNAM

IBT-UNAM : Dr. Fidel Alejandro Sanchez Flores


Dr. Fidel Alejandro Sanchez Flores

Encargado de la Unidad de Secuenciación Masiva y Bioinformática


Grupo del Dr. Lorenzo Patrick Segovia



Oficina +52 (777) 329-1864
desde la CDMX 562-27864

red UNAM 27864

Laboratorio +52 (777) 329-1777 ext 38151.
desde la CDMX 562-27777 ext 38151

red UNAM 38151

- Licenciatura: Investigación Biomédica Básica, IIB-UNAM (2001)
- Doctorado: Ciencias Bioquímicas, IBT-UNAM (2007) con especialidad en Bioinformática
- Estancia de Investigación: Postdoctoral Proyecto del genoma de Taenia solium, UNAM (2007-2008)
- Estancia de Investigación: Postdoctoral Wellcome Trust Sanger Insitute, Cambridge, UK (2009-2011)


Biol. Jose Santiago Sanchez

Q.B.P. Micheel Vichi

Marcos Chiñas

Marisol Navarro

Q.F.B. Irwing David Vásquez

Publicaciones recientes

Nabor-Romero,O. Rojas-Martinez,R.I. Ochoa-Martinez,D.L. Vega-Arreguin,J. Sanchez-Flores,F.A. Zavaleta-Mejia,E. 2020. Avances en el conocimiento sobre el rompimiento de la resistencia de chile cm-334 (capsicum annuum l.) A phytophthora capsici por nacobbus aberrans Nematropica, 50, 45-58.

Raggi,L. Garcia-Guevara,F. Godoy-Lozano,E.E. Martinez-Santana,A. Escobar-Zepeda,A. Gutierrez-Rios,R.M. Loza,A. Merino,E. Sanchez-Flores,A. Licea-Navarro,A. Pardo-Lopez,L. Segovia,L. Juarez,K. 2020. Metagenomic Profiling and Microbial Metabolic Potential of Perdido Fold Belt (NW) and Campeche Knolls (SE) in the Gulf of Mexico Frontiers in Microbiology, 11, .

Chincoya,D.A. Sanchez-Flores,A. Estrada,K. Diaz-Velasquez,C.E. Gonzalez-Rodriguez,A. Vaca-Paniagua,F. Davila,P. Arias,S. Solorzano,S. 2020. Identification of High Molecular Variation Loci in Complete Chloroplast Genomes of Mammillaria (Cactaceae, Caryophyllales) Genes (Basel), 11, 830.

Taboada,B. Vazquez-Perez,J.A. Munoz-Medina,J.E. Ramos-Cervantes P. Escalera-Zamudio,M. Boukadida,C. Sanchez-Flores,A. Isa,P. Mendieta-Condado E. Martinez-Orozco,J.A. Becerril-Vargas,E. Salas-Hernandez,J. Grande,R. Gonzalez-Torres,C. Gaytan-Cervantes,F.J. Vazquez,G. Pulido,F. Araiza-Rodriguez A. Garces-Ayala F. Gonzalez-Bonilla,C.R. Grajales-Muniz C. Borja-Aburto,V. Barrera-Badillo G. Lopez,S. Hernandez-Rivas L. Perez-Padilla,R. Lopez-Martinez,I. Avila-Rios,S. Ruiz-Palacios,G. Ramirez-Gonzalez,J.E. Arias,C.F. 2020. Genomic Analysis of Early SARS-CoV-2 Variants Introduced in Mexico Journal of Virology, 94, .

Sanchez-Reyes,A. Breton-Deval,L. Mangelson,H. Sanchez-Flores,A. 2020. Draft genome sequence of "Candidatus Afipia apatlaquensis" sp. nov., IBT-C3, a potential strain for decolorization of textile dyes BMC Research Notes, 13, 265.

Breton-Deval,L. Sanchez-Reyes,A. Sanchez-Flores,A. Juarez,K. Salinas-Peralta,I. Mussali-Galante,P. 2020. Functional Analysis of a Polluted River Microbiome Reveals a Metabolic Potential for Bioremediation Microorganisms, 8, 554.

Hernandez-Valle,J. Sanchez-Flores,A. Poggio,S. Dreyfus,G. Camarena,L. 2020. The CtrA regulon of Rhodobacter sphaeroides favors adaptation to a particular life style Journal of Bacteriology, 202, 00678-19.

Solorzano,S. Chincoya,D.A. Sanchez-Flores,A. Estrada,K. Diaz-Velasquez,C.E. Gonzalez-Rodriguez,A. Vaca-Paniagua,F. Davila,P. Arias,S. 2019. De Novo Assembly Discovered Novel Structures in Genome of Plastids and Revealed Divergent Inverted Repeats in Mammillaria (Cactaceae, Caryophyllales) Plants (Basel), 8, 392.

Breton-Deval,L. Sanchez-Flores,A. Juarez,K. Vera-Estrella,R. 2019. Integrative study of microbial community dynamics and water quality along The Apatlaco River Environmental Pollution, 255, 113158.

Gonzalez,L.M. Estrada,K. Grande,R. Jimenez-Jacinto,V. Vega-Alvarado,L. Sevilla,E. Barrera,J. Cuesta,I. Zaballos,A. Bautista,J.M. Lobo,C.A. Sanchez-Flores,A. Montero,E. 2019. Comparative and functional genomics of the protozoan parasite Babesia divergens highlighting the invasion and egress processes PLoS Neglected Tropical Diseases, 13, e0007680.

Jimenez-Jacinto,V. Sanchez-Flores,A. Vega-Alvarado,L. 2019. Integrative Differential Expression Analysis for Multiple EXperiments (IDEAMEX): A Web Server Tool for Integrated RNA-Seq Data Analysis Frontiers in Genetics, 10, 279.

Garcia-Lopez,G. Avila-Gonzalez,D. Garcia-Castro,I.L. Flores-Herrera,H. Molina-Hernandez,A. Portillo,W. Diaz-Martinez,N.E. Sanchez-Flores,A. Verleyen,J. Merchant-Larios,H. Diaz,N.F. 2019. Pluripotency markers in tissue and cultivated cells in vitro of different regions of human amniotic epithelium Experimental Cell Research, 375, 31-41.

Munoz-Medina,J.E. Garcia-Knight,M.A. Sanchez-Flores,A. Monroy-Munoz,I.E. Grande,R. Esbjornsson,J. Santacruz-Tinoco,C.E. Gonzalez-Bonilla,C.R. 2018. Evolutionary analysis of the Chikungunya virus epidemic in Mexico reveals intra-host mutational hotspots in the E1 protein PLoS ONE, 13, e0209292.

Godoy-Lozano,E.E. Escobar-Zepeda,A. Raggi,L. Merino,E. Gutierrez-Rios,R.M. Juarez,K. Segovia,L. Licea-Navarro,A.F. Gracia,A. Sanchez-Flores,A. Pardo-Lopez,L. 2018. Bacterial diversity and the geochemical landscape in the southwestern Gulf of Mexico Frontiers in Microbiology, 9, 2528.

Barreto-Curiel,F. Ramirez-Puebla,S.T. Ringo,E. Escobar-Zepeda,A. Godoy-Lozano,E. Vazquez-Duhalt,R. Sanchez-Flores,A. Viana,M.T. 2018. Effects of extruded aquafeed on growth performance and gut microbiome of juvenile Totoaba macdonaldi Animal Feed Science and Technology, 245, 91-103.

Garcia-Maldonado,J.Q. Escobar-Zepeda,A. Raggi,L. Bebout,B.M. Sanchez-Flores,A. Lopez-Cortes,A. 2018. Bacterial and archaeal profiling of hypersaline microbial mats and endoevaporites, under natural conditions and methanogenic microcosm experiments Extremophiles, 22, 903-916.

Escobar-Zepeda,A. Godoy-Lozano,E.E. Raggi,L. Segovia,L. Merino,E. Gutierrez-Rios,R.M. Juarez,K. Licea-Navarro,A.F. Pardo-Lopez,L. Sanchez-Flores,A. 2018. Analysis of sequencing strategies and tools for taxonomic annotation: Defining standards for progressive metagenomics Scientific Reports, 8, 12034 [correction 10(1) 4259].

Sanchez-Pozos,K. Ortiz-Lopez,M.G. Pena-Espinoza,B.I. Granados-Silvestre,M.A. Jimenez-Jacinto,V. Verleyen,J. Tekola-Ayele,F. Sanchez-Flores,A. Menjivar,M. 2018. Whole-exome sequencing in maya indigenous families: variant in PPP1R3A is associated with type 2 diabetes Molecular Genetics and Genomics, 293, 1205-1216.

Contreras-Castro,L. Maldonado,L.A. Quintana,E.T. Raggi,L. Sanchez-Flores,A. 2018. Draft Genome Sequence of Two Marine Plantactinospora spp. from the Gulf of California Microbiology Resource Announcements, 6, UNSP e00436-18.

Olvera-Garcia,M. Sanchez-Flores,A. Quirasco,B.M. 2018. Genomic and functional characterisation of two Enterococcus strains isolated from Cotija cheese and their potential role in ripening Applied Microbiology and Biotechnology, 102, 2251-2267.

Carrillo-Tapia,E. Garcia-Garcia,E. Herrera-Gonzalez,N.E. Yamazaki-Nakashimada,M.A. Staines-Boone,A.T. Segura-Mendez,N.H. Scheffler-Mendoza,S.C. Farrill-Romanillos,O. Gonzalez-Serrano,M.E. Rodriguez-Alba,J.C. Santos-Argumedo,L. Berron-Ruiz,L. Sanchez-Flores,A. Lopez-Herrera,G. 2018. Delayed diagnosis in X-linked agammaglobulinemia and its relationship to the occurrence of mutations in BTK non-kinase domains Expert Review of Clinical Immunology, 14, 83-93.

Garcia,C.F. Pedrini,N. Sanchez-Paz,A. Reyna-Blanco,C.S. Lavarias,S. Muhlia-Almazan,A. Fernandez-Gimenez,A. Laino,A. de-la-Re-Vega,E. Lukaszewicz,G. Lopez-Zavala,A.A. Brieba,L.G. Criscitello,M.F. Carrasco-Miranda,J.S. Garcia-Orozco,K.D. Ochoa-Leyva,A. Rudino-Pinera,E. Sanchez-Flores,A. Sotelo-Mundo,R.R. 2018. De novo assembly and transcriptome characterization of the freshwater prawn Palaemonetes argentinus: Implications for a detoxification response Marine Genomics, 37, 74-81.

Titulaer,M. Melgoza-Castillo,A. Panjabi,A.O. Sanchez-Flores,A. Martinez-Guerrero,J.H. Macias-Duarte,A. Fernandez,J.A. 2017. Molecular analysis of stomach contents reveals important grass seeds in the winter diet of Baird's and Grasshopper sparrows, two declining grassland bird species PLoS ONE, 12, e0189695.

Olvera,A. Martyniuk,C.J. Buisine,N. Jimenez-Jacinto,V. Sanchez-Flores,A. Sachs,L.M. Orozco,A. 2017. Differential transcriptome regulation by 3,5-T2 and 3',3,5-T3 in brain and liver uncovers novel roles for thyroid hormones in tilapia Scientific Reports, 7, 15043.

Ortiz-Berrocal,M. Lozano,L. Sanchez-Flores,A. Nava,N. Hernandez,G. Reddy,P.M. 2017. Expression in rice of an autoactive variant of Medicago truncatula DMI3, the Ca+2/calmodulin-dependent protein kinase from the common symbiotic pathway modifies root transcriptome and improves mycorrhizal colonization Plant Biotechnology Reports, 11, 271-287.

Sandoval-Azuara,S.E. Perea-Jacobo,R. Muniz-Salazar,R. Robbe-Austerman,S. Perera-Ortiz,A. Lopez-Valencia,G. Bravo,D.M. Sanchez-Flores,A. Miranda-Guzman,D. Flores-Lopez,C.A. Zenteno-Cuevas,R. Laniado-Laborin,R. Lafarga de la,C.F. Stuber,T.P. 2017. Whole genome sequencing of Mycobacterium bovis to obtain molecular fingerprints in human and cattle isolates from Baja California, Mexico International Journal of Infectious Diseases, 63, 48-56.

Rodriguez-Anaya,L.Z. Ibarra-Gamez,J.C. Lares-Villa,F. Casillas-Hernandez,R. Sanchez-Flores,A. Gonzalez-Galaviz,J.R. 2016. Analysis of repeated compound units in ORF94 of white spot syndrome virus isolated from Litopenaeus vannamei from outbreak and non-outbreak shrimp farms in Sonora, Mexico Latin American Journal of Aquatic Research, 44, 850-854.

Ramirez-Puebla,S.T. Ormeno-Orrillo,E. Vera-Ponce de Leon A. Lozano,L. Sanchez-Flores,A. Rosenblueth,M. Martinez-Romero,E. 2016. Genomes of Candidatus Wolbachia bourtzisii wDacA and Candidatus Wolbachia pipientis wDacB from the Cochineal Insect Dactylopius coccus (Hemiptera: Dactylopiidae) G3: Genes, Genomes, Genetics, 6, 3343-3349.

Sanchez-Flores,A. Penazola,F. Carpinteyro-Ponce,J. Nazario-Yepiz,N. Abreu-Goodger,C. Machado,C.A. Markow,T.A. 2016. Genome Evolution in Three Species of Cactophilic Drosophila G3: Genes, Genomes, Genetics, 6, 3097-3105.

Vera-Ponce De Leon,A. Sanchez-Flores,A. Rosenblueth,M. Martinez-Romero,E. 2016. Fungal Community Associated with Dactylopius (Hemiptera: Coccoidea: Dactylopiidae) and Its Role in Uric Acid Metabolism Frontiers in Microbiology, 7, 954.

Bedoya-Lopez,A. Estrada,K. Sanchez-Flores,A. Ramirez,O.T. Altamirano,C. Segovia,L. Miranda-Rios,J. Trujillo-Roldan,M.A. Valdez-Cruz,N.A. 2016. Effect of Temperature Downshift on the Transcriptomic Responses of Chinese Hamster Ovary Cells Using Recombinant Human Tissue Plasminogen Activator Production Culture PLoS ONE, 11, e0151529.

Escobar-Zepeda,A. Sanchez-Flores,A. Quirasco Baruch,M. 2016. Metagenomic analysis of a Mexican ripened cheese reveals a unique complex microbiota Food Microbiology, 57, 116-127.

Rodriguez-Anaya,L.Z. Gonzalez-Galaviz,J.R. Casillas-Hernandez,R. Lares-Villa,F. Estrada,K. Ibarra-Gamez,J.C. Sanchez-Flores,A. 2016. Draft Genome Sequence of White Spot Syndrome Virus Isolated from Cultured Litopenaeus vannamei in Mexico Genome Announcements, 4, .

Hunt,V.L. Tsai,I.J. Coghlan,A. Reid,A.J. Holroyd,N. Foth,B.J. Tracey,A. Cotton,J.A. Stanley,E.J. Beasley,H. Bennett,H.M. Brooks,K. Harsha,B. Kajitani,R. Kulkarni,A. Harbecke,D. Nagayasu,E. Nichol,S. Ogura,Y. Quail,M.A. Randle,N. Xia,D. Brattig,N.W. Soblik,H. Ribeiro,D.M. Sanchez-Flores,A. Hayashi,T. Itoh,T. Denver,D.R. Grant,W. Stoltzfus,J.D. Lok,J.B. Murayama,H. Wastling,J. Streit,A. Kikuchi,T. Viney,M. Berriman,M. 2016. The genomic basis of parasitism in the Strongyloides clade of nematodes Nature Genetics, 48, 299-307.

Libros y capítulos recientes

Nabor-Romero,O. Rojas-Martinez,R.I. Zavaleta-Mejia,E. Ochoa-Martinez,D.L. Sanchez-Flores,F.A. Vega-Arreguin,J. 2018. Análisis del transcriptoma de chile cm-334 en el rompimiento de resistencia a Phytophthora capsici por Nacobbus aberrans en: Memoria del Simposio Avances de Investigación Posgrado en Fitosanidad Colegio de Postgraduados 22 agosto 2018. pags. 89-94

Sanchez-Flores,F. 2016. Secuenciacion masiva en la era genomica en: Ramirez-Bello,J. Genómica estructural y funcional en las enfermedades multifactoriales. UNAM.

Otras Publicaciones

Valderrama-Blanco,M.B. Sanchez-Flores,F.A. Burguete-Garcia,A.I. Orozco-Nunez,E. 2020. La colaboración Academia-Gobierno como un elemento importante para la atención temprana de la pandemia de COVID-19 en Cuernavaca Biotecnología en Movimiento.Revista de divulgación del Instituto de Biotecnología de la UNAM, 22, 18-22.

Sanchez-Reyes,A. Breton-Deval,L.M. Mangelson,H. Salinas-Peralta,I. Sanchez-Flores,A. 2020. Hi-C deconvolution of a textile-dye degrader microbiome reveals novel taxonomic landscapes and link phenotypic potential to individual genomes bioRxiv, Preprint posted June 18, 2020.

Taboada,B. Vazquez-Perez,J.A. Munoz-Medina,J.E. Ramos-Cervantes,P. Escalera-Zamudio,M. Boukadida,C. Sanchez-Flores,A. Isa,P. Mendieta-Condado,E. Martinez-Orozco,J.A. Becerril-Vargas,E. Salas-Hernandez,J. Grande,R. Gonzalez-Torres,C. Gaytan-Cervantes,F.J. Vazquez,G. Pulido,F. Araiza-Rodriguez,A. Garces-Ayala,F. Gonzalez-Bonilla,C.R. Grajales-Muniz,C. Borja-Aburto,V.H. Barrera-Badillo,G. Lopez,S. Hernandez-Rivas,L. Perez-Padilla,R. Lopez Martinez,I. Avila-Rios,S. Ruiz-Palacios,G. Ramirez-Gonzalez,J.E. Arias,C.F. 2020. Genomic analysis of early SARS-CoV-2 strains introduced in Mexico bioRxiv, Preprint posted May 30, 120402.

Breton-Deval,L. Sanchez-Reyes,A. Sanchez-Flores,A. Juarez,K. Mussali-Galante,P. 2019. One step towards bioremediating a heavily polluted river: Metagenomic insights on the function of microbial community bioRxiv, Preprint posted June 21, 2019, 675876.

Breton-Deval,L. Juarez,K. Sanchez-Flores,A. Vera-Estrella,R. 2019. Water quality assessments and metagenomic analysis of the polluted river Apatlaco, Mexico bioRxiv, Preprint 21 January 2019, 536128.

Jimenez-Jacinto,V. Escobar-Zepeda,A. Godoy,E. Vega-Alvarado,L. Verleyen,J. Estrada,K. Sanchez-Flores,A. 2017. El metagenoma del taco Biotecnología en Movimiento.Revista de divulgación del Instituto de Biotecnología de la UNAM, 8, 29-32.

Sanchez-Flores,A. 2015. Unidad de Secuenciación Masiva y Bioinformática, a la vanguardia de la ciencia Biotecnología en Movimiento.Revista de divulgación del Instituto de Biotecnología de la UNAM, 2, 23-24.

Sanchez-Flores,A. 2015. Las nuevas tecnologías y el cómputo nos ayudan a estudiar detalladamente a los patógenos Biotecnología en Movimiento.Revista de divulgación del Instituto de Biotecnología de la UNAM, 2, 3-4.

* Indica publicación con otra institución de adscripción

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